The multiscale in silico liver

نویسندگان

  • C. Anthony Hunt
  • Li Yan
  • Glen E.P. Ropella
  • Sunwoo Park
  • Shahab Sheikh-Bahaei
  • Michael S. Roberts
چکیده

similarities to glandular carcinoma. On the other hand, dysregulation of the in silico principle governing proliferation had muted effects on growth morphologies. Comparatively, the 2 alterations and their misbalance gave rise to distinct morphologies that mark intermediate stages of a simulated progression toward malignancy. In cases where unchecked growth was observed, we identified structural patterns that are similar to observations of epithelial cancer in vivo, such as solid nests and regions of matrix surrounded by cells but in a disorganized pattern. Conclusions: Considered together, our simulations demonstrate how computational models of this type can be interrogated and manipulated to test hypotheses and attain mechanistic insight that encompass seemingly varied aspects of morphogenesis in vitro. The results reaffirm the hypothesis that the composition and arrangement of the extracellular environment have a strong influence on overall morphogenic outcome. They also show that even a slight alteration or dysregulation of a normal in silico operating principle can cause substantial changes in growth characteristics, and suggest that the normal morphogenesis of epithelia tolerates very little deviation from strict adherence to principles of operation. Experimenting with simulation models of this type is expected to provide a potentially fruitful new strategy to gain deeper insight into the operational causes of oncogenesis and identify new targets of cell-based therapies for cancers of epithelial origin.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Zonation of drug-induced, hepatic enzyme induction: falsifying fine grained mechanisms within a validated, multiscale In Silico Liver

The focus is a previously reported In Silico Liver (ISL) model family, which is an iteratively developed suite of hypotheses about how rat livers function. We implement a medium-grained Enzyme Induction mechanism that is intended to validate against the coarse grained measure of drug fraction in perfusate during single-pass perfusions. It is falsified against a medium grained measure of hepatic...

متن کامل

In-silico Evaluation of Rare Codons and their Positions in the Structure of ATP8b1 Gene

Background: Progressive familial intrahepatic cholestases (PFIC) are a spectrum of autosomal progressive liver diseases developing to end-stage liver disease. ATP8B1 deficiency caused by mutations in ATP8B1 gene encoding a P-type ATPase leads to PFIC1. The gene for PFIC1 has been mapped on a 19-cM region of 18q21-q22, and a gene defect in ATP8B1 can cause deregulations in bile salt transporters...

متن کامل

Multiscale Multiphysic Mixed Geomechanical Model for Deformable Porous Media Considering the Effects of Surrounding Area

Porous media of hydro-carbon reservoirs is influenced from several scales. Effective scales of fluid phases and solid phase are different. To reduce calculations in simulating porous hydro-carbon reservoirs, each physical phenomenon should be assisted in the range of its effective scale. The simulating with fine scale in a multiple physics hydro-carbon media exceeds the current computational ca...

متن کامل

Multiscale Analysis of Transverse Cracking in Cross-Ply Laminated Beams Using the Layerwise Theory

A finite element model based on the layerwise theory is developed for the analysis of transverse cracking in cross-ply laminated beams. The numerical model is developed using the layerwise theory of Reddy, and the von Kármán type nonlinear strain field is adopted to accommodate the moderately large rotations of the beam. The finite element beam model is verified by comparing the present numeric...

متن کامل

A Multiscale Agent-Based in silico Model of Liver Fibrosis Progression

Chronic hepatic inflammation involves a complex interplay of inflammatory and mechanical influences, ultimately manifesting in a characteristic histopathology of liver fibrosis. We created an agent-based model (ABM) of liver tissue in order to computationally examine the consequence of liver inflammation. Our liver fibrosis ABM (LFABM) is comprised of literature-derived rules describing molecul...

متن کامل

Mechanistic agent-based damage and repair models as hypotheses for patterns of necrosis caused by drug induced liver injury

Increasing model reuse and facilitating repurposing is expected to expand simulation use for better understanding biological phenomena. We demonstrate doing so in the context of liver diseases caused by toxic exposure to xenobiotics. A clinical goal is improved mechanistic explanations of how damage is generated, which can lead to new strategies to block and/or reverse injury. A goal for this w...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2007